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Automated Brain MRI Image Labeling Holds Enormous Potential for AI

By MedImaging International staff writers
Posted on 06 Aug 2021

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Researchers have automated brain MRI image labeling, needed to teach machine learning image recognition models, by deriving important labels from radiology reports and accurately assigning them to the corresponding MRI examinations, allowing more than 100,00 MRI examinations to be labeled in less than half an hour.

This was the first study that allowed researchers at King's College London (London UK) to label complex MRI image datasets at scale. The researchers say it would take years to manually perform labelling of more than 100,000 MRI examinations. Deep learning typically requires tens of thousands of labelled images to achieve the best possible performance in image recognition tasks. This represents a bottleneck to the development of deep learning systems for complex image datasets, particularly MRI which is fundamental to neurological abnormality detection.

"By overcoming this bottleneck, we have massively facilitated future deep learning image recognition tasks and this will almost certainly accelerate the arrival into the clinic of automated brain MRI readers. The potential for patient benefit through, ultimately, timely diagnosis, is enormous," said senior author, Dr. Tom Booth from the School of Biomedical Engineering & Imaging Sciences at King's College London.

"This study builds on recent breakthroughs in natural language processing, particularly the release of large transformer-based models such as BERT and BioBERT which have been trained on huge collections of unlabeled text such as all of English Wikipedia, and all PubMed Central abstracts and full-text articles; in the spirit of open-access science, we have also made our code and models available to other researchers to ensure that as many people benefit from this work as possible," added lead author, Dr. David Wood from the School of Biomedical Engineering & Imaging Sciences.

According to the researchers, while one barrier has now been overcome, further challenges will be, firstly, to perform the deep learning image recognition tasks which also have multiple technical challenges; and secondly, once this is achieved, to ensure the developed models can still perform accurately across different hospitals using different scanners.

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71 (283.00285339355): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294789190 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

72 (!!!!! 24964.094161987): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

73 (89.883804321289): SELECT show_live FROM jos_com_show_setting LIMIT 1

74 (43.869018554688): SELECT show_live FROM jos_com_show_setting LIMIT 1

75 (38.862228393555): SELECT show_live FROM jos_com_show_setting LIMIT 1

76 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

77 (37.908554077148): SELECT show_live FROM jos_com_show_setting LIMIT 1

78 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

79 (89.883804321289): SELECT show_live FROM jos_com_show_setting LIMIT 1

80 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

81 (37.908554077148): SELECT show_live FROM jos_com_show_setting LIMIT 1

82 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

83 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

84 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

85 (41.007995605469): SELECT show_live FROM jos_com_show_setting LIMIT 1

86 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

87 (!!!!! 1106.0237884521): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294789190 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

88 (77.962875366211): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294789190 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

89 (47.922134399414): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

90 (72.002410888672): SELECT show_live FROM jos_com_show_setting LIMIT 1

91 (41.961669921875): SELECT show_live FROM jos_com_show_setting LIMIT 1

92 (38.14697265625): SELECT show_live FROM jos_com_show_setting LIMIT 1

93 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

94 (46.014785766602): SELECT show_live FROM jos_com_show_setting LIMIT 1

95 (37.193298339844): SELECT show_live FROM jos_com_show_setting LIMIT 1

96 (41.007995605469): SELECT show_live FROM jos_com_show_setting LIMIT 1

97 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

98 (35.04753112793): SELECT show_live FROM jos_com_show_setting LIMIT 1

99 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

100 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

101 (37.193298339844): SELECT show_live FROM jos_com_show_setting LIMIT 1

102 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

103 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

104 (117.06352233887): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

105 (63.896179199219): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

106 (676.87034606934): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294789190 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

107 (593.90068054199): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294789190 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

108 (154.97207641602): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

109 (66.995620727539): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

110 (!!!!! 5395.8892822266): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294789190 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

111 (!!!!! 3968.0004119873): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294789190 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

112 (!!!!! 1391.8876647949): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

113 (!!!!! 4579.0672302246): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

114 (156.87942504883): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

115 (78.916549682617): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

116 (112.05673217773): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

117 (66.995620727539): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

118 (89.168548583984): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

119 (66.041946411133): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

120 (395.05958557129): SELECT * FROM trending_articles WHERE `journal_id` = 10 AND `timestamp` <= NOW() + INTERVAL 7 DAY ORDER BY `order`

121 (!!!!! 63225.030899048): SELECT * FROM jos_deeppockets WHERE jos_deeppockets.cat = 10 AND jos_deeppockets.type = 'deeppockets_item' AND jos_deeppockets.published = 1 AND jos_deeppockets.created + INTERVAL 14 DAY >= NOW() ORDER BY jos_deeppockets.hits DESC LIMIT 7

122 (!!!!! 13252.973556519): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

123 (341.17698669434): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

124 (!!!!! 1980.0662994385): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294789190 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294789190 AND type='deeppockets_item' AND published='1' LIMIT 1

125 (!!!!! 1553734.0641022): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

126 (412.94097900391): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

127 (!!!!! 2298.11668396): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

128 (316.85829162598): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

129 (355.95893859863): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

130 (!!!!! 1968.8606262207): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

131 (357.86628723145): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

132 (730.99136352539): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

133 (231.98127746582): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

134 (311.13624572754): SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

135 (108.00361633301): SELECT name FROM jos_deeppockets WHERE id=212

136 (97.036361694336): SELECT name FROM jos_deeppockets WHERE id=212

137 (478.02925109863): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))212((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

138 (402.92739868164): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))212((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

139 (65.088272094727): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

140 (45.061111450195): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

141 (!!!!! 5689.1441345215): TRUNCATE TABLE jos_trademed_module

142 (627.99453735352): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294789190 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

143 (123.97766113281): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294789190 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

144 (!!!!! 2044.2008972168): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

145 (131.84547424316): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

146 (128.98445129395): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

147 (155.92575073242): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

148 (!!!!! 2149.1050720215): SELECT jos_item.* FROM jos_item INNER JOIN jos_number ON jos_item.numberID=jos_number.id WHERE 1=1 AND (jos_item.imgMini<>'') AND jos_item.type='L' AND jos_item.numberID= ( SELECT jos_number.id FROM jos_number WHERE jos_number.journalID IN (10) and jos_number.id in (select distinct jos_number.id from jos_number join jos_item on jos_item.numberid=jos_number.id where jos_item.type='P') ORDER BY (CONVERT(SUBSTRING(issue,1,2),SIGNED) + (CONVERT(SUBSTRING(issue,3,2),SIGNED)*100)) DESC LIMIT 0,1 ) ORDER BY RAND() DESC LIMIT 6

149 (449.89585876465): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

150 (52.213668823242): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

151 (388.86070251465): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294789190 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294789190 AND type='deeppockets_item' AND published='1' LIMIT 1

152 (862.12158203125): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=212 or channel_id is null)

153 (!!!!! 2627.1343231201): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=212 or channel_id is null)

154 (566.95938110352): SELECT livesite FROM jos_dp_categories WHERE id=10 AND published='1' LIMIT 1

155 (133.99124145508): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

156 (50.067901611328): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294789190 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294789190 AND published='1' LIMIT 1

157 (301.12266540527): select jos_twitters.link from jos_twitters where cat=10

158 (111.10305786133): select jos_facebook.link from jos_facebook where cat=10

159 (81.062316894531): select jos_google_plus.link from jos_google_plus where cat=10

160 (64.849853515625): select jos_linkedin.link from jos_linkedin where cat=10

161 (389.09912109375): update jos_bannersmanager_banner set impmade=impmade+1 where id in(14615,14202,14203)

162 (!!!!! 3675.9376525879): insert into jos_banners_delta values (14615,'2025-04-29 20:44:04','18.117.189.90','view'),(14202,'2025-04-29 20:44:04','18.117.189.90','view'),(14203,'2025-04-29 20:44:04','18.117.189.90','view')

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